Listed below, are the materials from the VERITY 2021 Bioinformatics Course on Bioinformatics in Clinical Data. The materials are organized by session and include presentations and video recordings. If you have any questions or issues accessing the material, please contact Jackie Stratton, jstratton1@bwh.harvard.edu.
Introduction to the Mini-Course: EHR, NLP, and ML – Katherine Liao, MD, MPH
Presentation Slides
Session Recording
Introduction to Natural Language Processing (NLP) – Tianrun (Austin) Cai, MD
Presentation Slides
Session Recording
Electronic Health Records (EHR) Phenotyping – Xu Shi, PhD
Introduction: Clinical Studies using EHR and where Machine Learning (ML) can help – Katherine Liao, MD, MPH
Presentation Slides
Session Recording
Different ML Approaches to Performing Clinical Studies with Noisy EHR Data – Tianxi Cai, ScD
What is possible with NLP? Numeric Extraction & Note Ranking – Austin Cai, MD
Connecting with the VERITY Bioinformatics Core – Katherine Liao, MD, MPH